Guide · Payment processing · 6 min read · Updated October 2026

How to automate payments and reconciliation with your accounting software

Connecting your payment and banking tools to accounting software such as QuickBooks or Xero lets payments, fees and currency conversions flow into your books automatically. That cuts manual data entry and reconciliation, reduces errors, and gives you a live view of cash.

Key takeaways

  • Integrations sync payments and fees into your books.
  • Accounts payable tools pay bills straight from your workflow.
  • Multi-currency transactions need correct exchange rates recorded.
  • Start with your highest-volume payments.

What to automate first

TaskHow automation helps
Paying billsApprove and pay invoices from one workflow
Recording paymentsPayments sync to your accounting software automatically
Fees and FXConversion rates and fees recorded with each transaction
Bank reconciliationTransactions matched to entries instead of by hand

Tools that connect to accounting software

  • Plooto: pays invoices, including in foreign currencies, from your accounts payable workflow, with QuickBooks and Xero integrations.
  • Wise Business: integrates with QuickBooks, Xero and Sage.
  • Most payment processors: export or sync payouts and fees to accounting software; check the integration for your platform.

A worked example

A business paying 60 supplier invoices a month spends hours entering and matching each one. With an accounts payable tool synced to its accounting software, invoices are approved, paid and recorded in one flow, and reconciliation becomes a review rather than a rebuild.

Common mistakes

  • Recording foreign payments at the wrong exchange rate.
  • Automating payments without an approval step.
  • Connecting tools without agreeing who owns reconciliation each month.

Providers that can help

Compare these providers, then request a free, no-obligation quote.

Top pick
Plooto 3.6 Treasi rating

Accounts payable with QuickBooks and Xero sync

$0 FX transfer fee
Learn more
Wise Business 3.9 Treasi rating

Integrates with QuickBooks, Xero and Sage

From 0.48% Conversion fee
Learn more

FAQs

What is payment reconciliation?

Matching the payments in your bank and payment accounts to the entries in your accounting records, so your books are accurate.

Which payment tools integrate with QuickBooks and Xero?

Many do. Plooto integrates with QuickBooks and Xero, and Wise Business integrates with QuickBooks, Xero and Sage. Check each provider’s current integrations.

How do I record foreign-currency payments correctly?

Record the exchange rate and fees actually applied to each payment. Integrations that sync transactions directly help avoid errors.

Is payment automation worth it for a small business?

It often is once you pay more than a handful of invoices a month, because it saves time and reduces errors.

Sources: Plooto and Wise published product information.

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